褪色沙雷菌耐药率与多位点序列分析研究

Drug resistance rate and multilocus sequence analysis of Serratia marcescens isolates

  • 摘要: 目的 研究褪色沙雷菌的耐药率与分子流行病学规律,建立多位点序列分析方法,明确其进化特征,为临床针对性使用抗菌药物和防控此致病菌感染提供依据。方法 对2013年9月-2014年12月分离的40株褪色沙雷菌进行体外药物敏感性试验与多位点序列分析(MLSA),并用Splits tree与CLUSTALW软件进行生物信息学分析,揭示其流行趋势。结果 体外药敏试验结果表明,40株褪色沙雷菌对13种抗菌药物的耐药率在10.0%~52.5%,对亚胺培南耐药率为32.5%; MLSA设计4个管家基因,GC含量约为60.0%; 各等位基因数分布于14~16,各多态性位点数分布于33~74,gyrB的多态性位点数最多(74个); Splits tree软件分裂分解分析结果显示,大部分褪色沙雷菌聚在一起,形成一个克隆复合体; CLUSTALW软件聚类分析结果显示,40株褪色沙雷菌形成19个ST型,其中ST8型12株,且ST8型是耐碳青霉烯类抗菌药物褪色沙雷菌的流行与暴发型,ST8、ST9、ST10与ST11形成一个克隆复合体CC8。结论 褪色沙雷菌对碳青霉烯类抗菌药物耐药率较高,且多为泛耐药菌株; 褪色沙雷菌的分子流行病学趋势相对较慢,在基因组上高度保守,目前需要重点监测以ST8型为代表褪色沙雷菌CC8克隆复合体的流行,以防其在医院的大规模流行与暴发。

     

    Abstract: OBJECTIVE To study the drug resistance rate and molecular epidemiological characteristics, establish the multilocus sequence analysis (MLSA), method, define the evolutionary characteristics so as to provide guidance for clinical use of antibiotics and prevention of infection caused by this species of pathogen. METHODS The in vitro drug susceptibility testing and MLSA were conducted for 40 strains of Serratia marcescens that were isolated from Sep 2013 to Dec 2014, and the biological information was analyzed by using Splits tree and CLUSTALW software so as to reveal the prevalence trend. RESULTS The result of the in vitro drug susceptibility testing indicated that the drug resistance rate of the 40 strains of S. marcescens to 13 antibiotics varied from 10.0% to 52.5%, and the drug resistance rate to imipenem was 32.5%.Four housekeeping genes were developed based on the MLSA, the content of GC was about 60.0%.The number of alleles ranged from 14 to 16. gyrB possessed the most polymorphism sites (74).Splits tree research indicated that the majority of S. marcescens isolates were classified into one clonal complex. CLUSTALW research indicated that all the isolates clustered into 19 STs, of which 12 isolates were in ST8, and ST8 was a major outbreak genotype which was resistant to carbapenems.ST8, ST9, ST10 and ST 11 were classified into one clonal complex CC8. CONCLUSION The drug resistance rate of the S. marcescens to carbapenems is relatively high, and most of the strains are pandrug-resistant.The molecular epidemiological trends of S. marcescens are relatively slow, and its genome is highly conserved.At present, it is necessary to focus on the monitoring of prevalence of the clonal complex ST8-CC8 in S. marcescens so as to prevent its major outbreak and prevalence in hospitals.

     

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