某三甲医院碳青霉烯类耐药肺炎克雷伯菌鉴定及分子流行病学特征

Identification and molecular epidemiological characteristics of carbapenem- resistant Klebsiella pneumoniae strains in a three-A hospital

  • 摘要: 目的 明确分离自山东省某三甲医院的碳青霉烯类耐药肺炎克雷伯菌(CRKP)的基因组学特征与流行趋势。方法 回顾性分析2023年3月-2024年2月枣庄市立医院肺炎克雷伯菌临床分离株的临床特点,随机选取非痰液来源的22株CRKP进行全基因组测序(WGS)分析,通过对多位点序列分型(MLST)、荚膜血清型、耐药基因、毒力因子的分析,完善该地区CRKP的分子流行病学特征。结果 共检出肺炎克雷伯菌临床分离株1 654株,其中CRKP 196株。检出CRKP患者主要来自重症监护室和老年病科;主要分离自痰液和尿液标本。22株非痰液来源的CRKP的WGS分析表明,其中21株CRKP由ST11-KL25与ST11-KL64两群构成,均携带blaKPC-2iucA基因,其中1株ST11-KL25(ZY-66)同时还携带有peg344、rmpA基因; 另发现1株ST25-KL2携带blaNDM-5,并未携带已知毒力基因。结论 医院携带blaKPC-2的菌株存在ST11-KL25和ST11-KL64的共流行,且ST11-KL25具有一定的传播能力,和国内报道有一定差异。ST11菌株存在交叉传播的可能,需引起医院感染管理科和临床重点科室的重点关注。

     

    Abstract: OBJECTIVE To define the genomic characteristic and prevalence trends of carbapenem-resistant Klebsiella pneumoniae(CRKP) isolated from a three-A hospital of Shandong Province. METHODS The clinical characteristics of the clinical Klebsiella pneumoniae isolates that were from Zaozhuang Municipal Hospital from Mar. 2023 to Feb. 2024 were retrospectively analyzed, and whole-genome sequencing(WGS) analysis was performed for 22 strains of CRKP that were randomly extracted from the strains isolated from non-sputum specimens. The molecular epidemiological characteristics of the CRKP strains were made completed through multilocus sequence typing(MLST) and analysis of capsular serotypes, drug resistance genes and virulence factors. RESULTSTotally 1 654 strains of K.pneumoniae were clinically isolated, 196 of which were CRKP. The patients who were detected with CRKP mainly came from intensive care unit and geriatrics department; the strains were mainly isolated from sputum and urine specimens. WGS analysis of the 22 strains of CRKP isolated from non-sputum specimens sources, 21 strains consisted of two clusters: ST11-KL25 and ST11-KL64, all of which carried blaKPC-2 and iucA genes, 1 strain of ST11-KL25(ZY-66)carried peg344 and rmpA genes at the same time; 1 strain of ST25-KL2 carried blaNDM-5 and did not carry the known virulence genes. CONCLUSION There is concurrent prevalence of ST11-KL25 and ST11-KL64 strains carrying blaKPC-2 in the hospital. The ST11-KL25 ha certain transmission capacity, which differs some what from the domestic reports. There is a possiblity of cross-transmission involving ST11 strains, which the hospital infection control department and key clinical departments should attach great importance to.

     

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