某教学医院分离的碳青霉烯类耐药肠杆菌的分子流行病学特征

Molecular epidemiological characteristics of carbapenem-resistant Enterobacteriaceae strains from a teaching hospital

  • 摘要: 目的 探讨某教学医院分离的碳青霉烯类耐药肠杆菌(CRE)的临床分布、耐药表型、基因型及其同源性,为耐药菌的防治提供指导。方法 收集2019年12月-2024年1月青岛大学附属医院临床分离的216株CRE,对其进行菌种鉴定、药敏试验、碳青霉烯酶检测及二代测序,统计分析其临床分布特点、耐药情况及其同源性。结果 216株CRE菌株,以大肠埃希菌(90株)、肺炎克雷伯菌(66株)和霍氏肠杆菌(29株)为主。大肠埃希菌主要携带blaNDM-5基因,共有39种ST型,占前三位的为ST167、ST410和ST617。其中,检出1株大肠埃希菌同时携带blaIMP-8blaNDM-5基因。肺炎克雷伯菌主要携带blaKPC-2基因,以ST11型为主。其中,1株肺炎克雷伯菌携带一种新的blaKPC基因,命名为blaKPC-223。本研究还获得了一株携带blaNDM-46基因的肺炎克雷伯菌。霍氏肠杆菌主要携带blaNDM-1基因,以ST171型为主。结论 JP2该医院分离的CRE菌株以大肠埃希菌、肺炎克雷伯菌和霍氏肠杆菌为主,菌株的多位点序列分型较多; 本研究发现肺炎克雷伯菌携带一种新的blaKPC-223的基因; 经检索,携带blaNDM-46基因的肺炎克雷伯菌和同时携带blaIMP-8blaNDM-5基因的大肠埃希菌均为首次报道。

     

    Abstract: OBJECTIVE To explore the clinical distribution, drug resistance phenotypes, genotypes and homology of the carbapenem-resistant Enterobacteriaceae (CRE) strains isolated from a teaching hospital so as to provide guidance for prevention and treatment of drug-resistant strains. METHODS Totally 216 clinical CRE isolates were collected from The Affiliated Hospital of Qingdao University from Dec. 2019 to Jan. 2024. The identification, drug susceptibility testing, carbapenemase test and next general sequencing were performed for the strains. The clinical distribution, drug resistance rates and homology of the strains were statistically analyzed. RESULTS Among the 216 strains of CRE, Escherichia coli (90 strains), Klebsiella pneumoniae (66 strains) and Enterobacter hormaechei (29 strains) were dominant. The E. coli strains mainly carried blaNDM-5 gene, with totally 39 ST types involved; ST167, ST410 and ST617 ranked the top 3. Among the E. coli strains, 1 strain carried blaIMP-8 and blaNDM-5 genes at the same time. The K. pneumoniae strains mainly carried blaKPC-2 gene, and ST11 was the predominant type. 1 of the K. pneumoniae strains carried a novel blaKPC gene named as blaKPC-223. A strain of K. pneumoniae that carried blaNDM-46 gene was obtained in the study. The E. hormaechei strains mainly carried blaNDM-1 gene, and ST171 was the predominant type. CONCLUSIONS E. coli, K. pneumoniae and E. hormaechei are dominant among the CRE strains isolated from the hospital. There are a variety of multilocus sequencing types of the strains. A novel blaKPC-223 gene is discovered in the K. pneumoniae strain. Databases retrieval indicates that it is for the first time to report the K. pneumoniae strain carrying blaNDM-46 gene and the E. coli strain carrying blaIMP-8 and blaNDM-5 genes at the first time.

     

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