基于靶向二代宏基因组测序的儿童呼吸道感染微生物组分析

Analysis of microbiome in children with respiratory tract infections based on targeted second-generation metagenomic sequencing

  • 摘要: 目的 分析本地区儿童呼吸道感染病原体流行病学特征,为临床精准诊疗及防控提供病原学依据。方法 纳入2024年1-12月于铜陵市人民医院就诊的呼吸道感染患儿为研究对象,分析靶向二代宏基因组测序技术(tNGS)检测咽拭子标本中主要呼吸道病原体核酸的检出情况。结果 本研究共纳入3 319例患儿,阳性检出率为98.16%,累计识别病原体8 845种次。病原体谱分布显示:细菌占54.92%、病毒占38.20%、非典型病原体比6.87%。优势病原体分布特征如下:细菌检出率前三位为流感嗜血杆菌占47.33%、卡他莫拉菌占29.41%、肺炎链球菌占24.68%; 病毒检出率前三位为鼻病毒(26.54%)、腺病毒(11.81%)和呼吸道合胞病毒(8.71%); 非典型病原体第一位的是肺炎支原体(14.70%)。另外,各种病原体的检出率随年龄段变化呈现不同的特征:婴儿期为病毒与细菌共同高发期,在幼儿与学龄前期时,主要细菌类病原体为流感嗜血杆菌和肺炎链球菌,同时鼻病毒和肺炎支原体常见; 学龄期则是肺炎支原体检出率高峰期。病原体的流行也具有季节性特征:春秋季以鼻病毒感染为主,冬季则进入流感病毒和呼吸道合胞病毒的感染高峰期,而流感嗜血杆菌的感染全年均高发。结论 本地区2024年儿童呼吸道感染以细菌性病原体为主导,其中流感嗜血杆菌为最常见病原体。

     

    Abstract: OBJECTIVE To analyze the epidemiological characteristics of pathogens causing respiratory tract infections in children in this region so as to provide etiological bases for precise clinical diagnosis and treatment as well as development of control strategies. METHODS The children with respiratory tract infections who were treated in People's Hospital of Tongling from Jan. 2024 to Dec. 2024 were recruited as the research subjects. The nucleic acid test for the major respiratory tract pathogens isolated from throat swab specimens was carried out by targeted next generation metagenomic sequencing (tNGS) technique. RESULTS Totally 3319 children were enrolled in the study, the positive rate was 98.16%, and 8845 species-times of pathogens were accumulatively identified. The distribution of etiological distribution showed that bacteria accounted for 54.92%, viruses 38.20%, atypical pathogens 6.87%. In terms of the distribution of predominant pathogens, Haemophilus influenzae (47.33%), Moraxella catarrhalis (29.41%) and Streptococcus pneumoniae (24.68%) ranked the top 3 species of bacteria for the isolation rates. Rhinovirus (26.54%), adenovirus (11.81%) and respiratory syncytial virus (8.71%) ranked the top 3 types of viruses in isolation rates. Mycoplasma pneumoniae (14.70%) ranked the first place of atypical pathogens. The isolation rates of the pathogens vary with the age, the infant period represented a high-incidence stage for both viruses and bacteria, Haemophilus influenzae and Streptococcus pneumoniae were the major species of bacterial pathogens during the toddler and preschool age, meanwhile the rhinovirus and Mycoplasma pneumoniae were common. The school age was the peak for the isolation rate of M. pneumoniae. The prevalence of pathogens exhibited seasonal characteristics: the rhinovirus infection was predominant in spring and autumn, winter was the peak for infections with influenza and RSV, while the Haemophilus influenzae infection was highly prevalence in the whole year. CONCLUSIONS The bacterial pathogens are dominant among the pathogens isolated from the children with respiratory tract infections in this region in 2024, and H. influenzae is the most common pathogen.

     

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