基于基因组学筛选鲍曼不动杆菌强生物被膜表型相关核心基因

Screening of strong biofilm phenotype-associated core genes in Acinetobacter baumannii based on genomics

  • 摘要: 目的 解析鲍曼不动杆菌强生物被膜表型的核心基因组特征。方法 通过结晶紫染色法评估20株临床分离株(源自神经外科住院患者脑脊液)及2个标准株的生物被膜形成能力,分析不同菌株形成生物被膜的能力差异,基于全基因组测序与比较基因组学筛选强生物被膜组的核心基因,并对核心基因进行动态表达分析。结果 22株菌株中筛选获得强生物被膜菌株4株,中生物被膜菌株13株、弱生物被膜菌株5株。在强生物被膜组中鉴定到5个共有且特有的核心基因:外排泵基因czcA、毒力因子wzb、耐药基因craA以及氨基酸转运蛋白编码基因rhtB与aroP。实时定量聚合酶链式反应(qRT-PCR)动态表达分析表明,在生物被膜形成初期,上述基因相较于浮游态均显著上调,平均上调幅度为4.52倍。至生物被膜成熟期,czcA、craA、rhtB和aroP的表达进一步升高,达7.94倍,而wzb的表达则出现回落。结论 本研究揭示了czcA-wzb-craA-rhtB-aroP基因模块在强生物被膜菌株中的保守性,核心基因动态表达揭示了强生物被膜由早期构建到成熟防御的功能转换,为靶向生物被膜早期感染提供了干预思路。

     

    Abstract: OBJECTIVE To characterize the core genomic features associated with the strong biofilm-forming phenotypes of Acinetobacter baumannii. METHODS The biofilm-forming capacities of 20 clinical isolates (from cerebrospinal fluid of hospitalized patients of neurosurgery department) and 2 standard strains were assessed by the crystal violet staining method. The difference in the biofilm-forming capacities of the strains was analyzed. The core genes of the strong biofilm-forming group were screened based on whole-genome sequencing and comparative genomics, and the dynamic expressions of these core genes were subsequently analyzed. RESULTS Among the 22 isolates, there were 4 strong biofilm isolates, 13 moderate biofilm isolates and 5 weak biofilm isolates that were obtained through the screening. Totally 5 core genes, both common and unique to the strong biofilm-forming group, were identified: the efflux pump gene czcA, virulence factor wzb, drug resistance gene craA and amino acid transporter encoding genes rhtB and aroP. The real-time quantitative polymerase chain reaction (qRT-PCR) dynamic analysis showed that the above genes were remarkably upregulated during the initial stage of biofilm formation as compared with the planktonic state, with an average upregulated margin 4.52-fold. The expressions of czcA, craA, rhtB and aroP further rose till the maturation period of biofilm, reaching up to 7.94-fold, while the expression of wzb decreased. CONCLUSIONS It is reveal the conservation of czcA-wzb-craA-rhtB-aroP gene module in the strong biofilm-forming strains in the study. The dynamic expression pattern of these core genes indicates a functional shift from early biofilm construction to mature defense in strong biofilms, providing insights for intervention strategies targeting early-stage biofilm infections.

     

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