多重耐药铜绿噬菌体YN02的生物学特性及基因组学分析

Biological characteristics and genomic analysis of multidrug-resistant Pseudomonas aeruginosa phage YN02

  • 摘要: 目的 分析多重耐药铜绿假单胞菌噬菌体YN02的生物学特性及全基因组特征,为院感防控及噬菌体临床应用奠定理论基础。方法 对气管切开术后肺部感染患者痰液样本分离出的菌株进行鉴定及抗菌药物敏感性实验,并以其为宿主菌,从医院污水中分离噬菌体。电镜观察其形态,测定其紫外、乙醇敏感性,酸碱和温度的耐受性、最佳感染复数和一步生长曲线,通过宿主谱实验评估其裂解范围。基于全基因组测序分析其基因组特征、功能注释及蛋白结构预测,构建系统发育树和平均核苷酸一致性热图,并进行比较基因组学分析。结果 分离得到1株多重耐药铜绿假单胞菌及其特异性噬菌体YN02,有约60 nm头部和约301 nm的尾部; 紫外照射或>50%乙醇浓度作用30 min可使其失活; 能在pH 2.0~12.0或4~50 ℃的环境中稳定存活; 最佳感染复数(MOI)为0.00001,潜伏期为70 min,裂解量约50 空斑形成单位(PFU)/细胞(cell),仅特异性裂解铜绿假单胞菌。基因组全长为93 989 bp,GC含量为0.55。预测到128个开放阅读框(ORF),为萨姆纳病毒科(Samunavirus)的新成员,未发现抗菌药物耐药基因、毒力因子和溶原模块相关蛋白。结论 分离得到的YN02是一株对乙醇不耐受,耐高温及强酸强碱,宿主特异性强的噬菌体,为多重耐药铜绿假单胞菌的噬菌体疗法和防治提供科学依据。

     

    Abstract: OBJECTIVE To analyze the biological characteristics and whole-genome features of the multidrug-resistant Pseudomonas aeruginosa phage YN02 so as to provide theoretical bases for prevention and control of infections and clinical application of phages. METHODS The strains that were isolated from sputum samples of the tracheotomy patients with postoperative pulmonary infections were identified, the antimicrobial susceptibility testing was performed, the strains were treated as host bacteria, and the phages were isolated from contaminated water of the hospital. Their morphology was observed via electron microscopy, and their sensitivity to ultraviolet radiation and ethanol, tolerance to pH and temperature, optimal multiplicity of infection n (MOI) and one-step growth curve were determined. The lysis range was assessed through host spectrum assays. The genomic features, functional annotation and protein structure prediction were analyzed on bases of whole genome sequencing, the phylogenetic tree and average nucleotide identity heatmaps were constructed, and the comparative genomic analysis was performed. RESULTS There was 1 strain of multidrug-resistant P. aeruginosa isolated and its specific phage with about 60 nm of head and 301 nm of tail; 30 min of ultraviolet radiation or acting with ethanol at concentration more than 50% could inactivate the strain; it remained stable in environment with pH value ranging between 2.0 and 12.0 or the temperature ranging between 4 and 50 ℃; the optimal MOI was 0.00001, with a latent period 70 min, the amount of lysis approximately 50 plaque forming unit (PFU)/cell. YN02 specifically lysed P. aeruginosa only. The genome was 93 989 bp in length with a GC content of 0.55. A total of 128 open reading frames (ORFs) were predicted, and YN02 was identified as a new member of the Samunavirus genus. No antimicrobial resistance genes, virulence factors or lysogeny-related proteins were detected. CONCLUSION The isolated phage YN02 exhibits high intolerance to ethanol, resistance to high temperature and pH and strict host specificity, which may provide scientific bases for phagotherapy, prevention and treatment of multidrug-resistant P. aeruginosa.

     

/

返回文章
返回