2020-2025年湖州地区临床分离K1血清型肺炎克雷伯菌耐药性及分子特征

Antimicrobial resistance and molecular characteristics of clinical isolates of K1 serotype Klebsiella pneumoniae from Huzhou in 2020-2025

  • 摘要: 目的 了解湖州地区医院来源的K1血清型肺炎克雷伯菌的耐药形势和分子流行病学特征。方法 收集湖州地区7家国家致病菌识别网哨点医院2020年1月-2025年11月临床分离的非重复性KP共572株,通过荧光定量聚合酶链反应(PCR)反应,共筛选出K1血清型肺炎克雷伯菌50株,进行拉丝试验,抗菌药物敏感性试验,全基因组测序分析确定其多位点序列(MLST)、耐药基因、毒力基因、质粒和毒力得分等分子特征,构建基于核心基因单核苷酸多态性(cgSNP)的系统发育树,分析该血清型菌株的进化特征。结果 湖州地区K1血清型肺炎克雷伯菌占比率为8.74%,拉丝试验阳性率为92.00%。药敏结果显示耐药率最高为氨苄西林(96.00%),其次是氯霉素(56.00%)和萘啶酸(42.00%)。MLST分析50株菌分为6种ST型,其中ST23为优势型别,占76.00%。生物信息学分析显示所有菌株共携带46种耐药基因,β-内酰胺基因blaSHV-11携带率最高达到86.00%; 5种毒力基因clbA、ybtS、iroB、iucA和rmpA的携带率分别为84.00%、96.00%、100.00%、94.00%和96.00%; Kleborate数据库毒力得分评估有41株菌达到最高毒力评分; 系统发育树显示为7个进化分支。结论 湖州地区K1血清型肺炎克雷伯菌高毒力株占比大,ST23为主要临床流行株,耐药情况严重,应加强监测,识别潜在感染传播风险。

     

    Abstract: OBJECTIVE To investigate the antimicrobial resistance and molecular epidemiological characteristics of K1 serotype Klebsiella pneumoniae strains from the hospitals in Huzhou. METHODS Totally 572 clinical isolates of non-repetitive K. pneumoniae were collected from 7 sentinel hospitals of Chinese Pathogen Identification Net in Huzhou. A total of 50 strains of K1 serotype K. pneumoniae were screened out by fluorescent quantitative polymerase chain reaction (PCR). The string test and antimicrobial susceptibility testing were performed. The molecular characteristics, including multilocus sequence typing (MLST), drug resistance genes, virulence genes, plasmids and virulence scores were determined through whole genome sequencing analysis. The phylogenetic tree was constructed based on core gene single nucleotide polymorphism (cgSNP), and the characteristics of the evolution of the serotype strains were observed. RESULTS The K1 serotype K. pneumoniae strains isolated from Huzhou accounted for 8.74%, the positive rate was 92.00% for the string test. The result of antimicrobial susceptibility testing showed that the drug resistance rate to ampicillin was highest (96.00%), followed by chloramphenicol (56.00%) and nalidixic acid (42.00%). MLST analysis indicated that the 50 strains belonged to 6 ST types, and ST23 was the predominant type, accounting for 76.00%. The bioinformatics analysis showed that all of the strains carried 46 types of drug resistance genes in total, the carrying rate of β-lactamase gene blaSHV-11 was highest (86.00%); the carrying rates of five types of virulence genes clbAybtSiroBiucA and rmpA were 84.00%, 96.00%, 100.00%, 94.00% and 96.00%, respectively. According to Kleborate database, totally 41 strains reached the highest virulence score. The phylogenetic tree showed that there were 7 evolutionary clusters. CONCLUSIONS The proportion of K1 serotype hypervirulent K. pneumoniae is high in Huzhou, ST23 is the predominant epidemic strain. The drug resistance is severe, and it is necessary to strengthen the surveillance and identify the potential risk of spread of infections.

     

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