上海市浦东新区环境污水中高黏液型肺炎克雷伯菌时空分布和耐药特征

Spatiotemporal distribution and antimicrobial resistance profiles of hypermucoviscous Klebsiella pneumoniae in environmental wastewater in Pudong New Area, Shanghai

  • 摘要: 目的 评估上海市浦东新区环境污水中高黏液型肺炎克雷伯菌(KP)的时空分布及耐药特征。方法 2024年1-12月基于前瞻性横断面分层抽样的主动监测,选择不同地域(城区、城郊、近郊、远郊)的三类(居民小区、社区医院、农贸市场)环境污水监测点110个,鉴别高黏液型与非高黏液型KP,使用基因组注释和分析高黏液型第三代头孢菌素耐药KP(3GKP)。结果 1 320瓶污水中KP与高黏液型KP分离率分别为55.53%和16.21%,高黏液型KP比值29.20%。三类污水间高黏液型KP检出率差异无统计学意义(P=0.069),不同地域高黏液型KP检出率差异有统计学意义(P=0.002):城区最低、远郊最高,不同地域高黏液型KP比值自城区到远郊呈递增趋势。16株高黏液型3GKP中11株来自居民小区,4株来自农贸市场,1株来自社区医院,序列型以ST281和ST1726为主,耐药基因以blaSHVsul为主,耐药质粒以IncFIB为主。4株ST1726/KL81属同一克隆,来自城郊、近郊和远郊的4个居民小区,耐药组与质粒特征亦相同(blaDHA-blaSHV-qnrB-sul-IncFIB);4株ST281/KL64均来源城区的农贸市场和居民小区,耐药组与质粒模式不同。结论 本次研究初步获得高黏液型3GKP在本地区多重耐药表型基线,基因组揭示其本地化序列型的多样性特征,初步发现其在城郊和城区进化出优势克隆,为后续研究KP的生态互作和耐药时空基因组学提供方向。

     

    Abstract: OBJECTIVE To evaluate the spatiotemporal distribution and antimicrobial resistance profiles of hypermucoviscous Klebsiella pneumoniae (KP) in environmental wastewater in Pudong New Area, Shanghai. METHODS From Jan. 2024 to Dec. 2024, based on a prospective active surveillance study through a cross-sectional stratified sampling design, a total of 110 environmental wastewater sampling sites were selected across four geographical regions (urban, suburban, exurban and peri-urban) and three site types (residential communities, community hospitals and farmers' markets). Hypermucoviscous and non-hypermucoviscous KP isolates were identified, and genomic annotation and analysis were performed on hypermucoviscous third-generation cephalosporin-resistant KP (3GKP) isolates.RESULTS Among 1,320 wastewater samples, the isolation rates of KP and hypermucoviscous KP were 55.53% and 16.21%, respectively, with a hypermucoviscous KP ratio of 29.20%. No statistically significant difference was observed in the isolation rates of hypermucoviscous KP among the three wastewater settings (P=0.069), whereas significant regional differences were noted (P=0.002), with the lowest rate in urban areas and the highest in rural areas, showing an increasing trend from urban to rural regions. Among the 16 hypermucoviscous 3GKP strains, 11 were from residential communities, 4 from farmers' markets, and 1 from a community hospital. Sequence types (STs) were predominantly ST281 and ST1726, with blaSHV and sul as the main resistance genes and IncFIB as the dominant plasmid type. Four ST1726/KL81 strains belonged to the same clone, originating from residential communities in suburban, peri-urban and rural areas, sharing identical resistance profiles and plasmid characteristics (blaDHA-blaSHV-qnrB-sul-IncFIB). In contrast, four ST281/KL64 strains were isolated from farmers' markets and residential communities in urban areas, exhibiting diverse resistance profiles and plasmid patterns. CONCLUSIONS This study establishes a baseline for the multidrug-resistant phenotype of hypermucoviscous 3GKP in the region. Genomic analysis reveals the diversity of locally prevalent sequence types and identifies the emergence of dominant clones in suburban and urban areas, thereby providing a foundation for future studies on KP ecological interactions and spatiotemporal resistance genomics.

     

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