基于靶向高通量测序的呼吸道感染患者病原体检出流行病学分析

Epidemiological analysis of pathogens causing respiratory tract infections based on targeted high-throughput sequencing

  • 摘要: 目的 探讨呼吸道感染病原体流行病学特征,为临床诊疗及防控提供依据。方法 回顾性分析2023年1月-2025年12月胜利油田中心医院呼吸道感染患者的痰液、支气管肺泡灌洗液样本,采用靶向高通量二代测序技术(tNGS)检测呼吸道病原体核酸,按年龄及年份分层分析。结果 5 518例呼吸道感染患者,其中人类疱疹病毒4型(EBV)检出率最高(38.71%),其次为白色念珠菌(27.17%),细菌以肺炎克雷伯菌(21.60%)为主,非典型病原体以肺炎支原体(5.49%)为主。肺炎克雷伯菌、铜绿假单胞菌、人类疱疹病毒1型、新型冠状病毒、甲型流感病毒、白色念珠菌、烟曲霉随年龄增长显著上升(P<0.001); 流感嗜血杆菌、肺炎链球菌、肺炎支原体、肺炎衣原体随年龄增长显著下降(P<0.001); 鼻病毒、人合胞病毒儿童组更高。金黄色葡萄球菌、人腺病毒青年组最高。2023-2025年多种病原体检出率有统计学差异(P<0.05)。嗜麦芽窄食单胞菌、鼻病毒、耶氏肺孢子菌检出率呈单调上升趋势(P<0.001); 白色念珠菌和烟曲霉检出率随年份呈单调下降趋势(P<0.001)。结论 本地区呼吸道感染以病毒为主,人类疱疹病毒4型(EBV)检出率高; 儿童易感流感嗜血杆菌、肺炎支原体,老年人群真菌及潜伏病毒感染风险更高; 耶氏肺孢子菌流行范围扩大,需加强临床警惕。

     

    Abstract: OBJECTIVE To explore the epidemiological characteristics of the pathogens causing respiratory tract infections so as to provide evidence for clinical diagnosis, treatment, prevention and control of the infections. METHODS The sputum and bronchoalveolar lavage fluid specimens were collected from the patients with respiratory tract infections who were treated in Shengli Oilfield Central Hospital from Jan. 2023 to Dec. 2025. The nucleic acids of the respiratory tract pathogens were tested by targeted high-throughput next generation sequencing (tNGS) technique. The chromatographic analysis was performed based on the age and years. RESULTS Among 5 518 patients with resqiratory trac infections, the isolation rate of Epstein-Barr virus (EBV) was highest (38.71%), followed by Candida albicans (27.17%). The bacteria were dominated by Klebsiella pneumoniae (21.60%). The atypical pathogen were dominated by Mycoplasma pneumoniae (5.49%). The isolation rates of K. pneumoniae, Pseudomonas aeruginosa, human herpesvirus 1, SARS-CoV-2, influenza A virus, C. albicans and Aspergillus fumigatus increased significantly with the age (P<0.001), whereas the isolation rates of Haemophilus influenzae, Streptococcus pneumoniae, M. pneumoniae and Chlamydia pneumoniae decreased significantly with the age (P<0.001). The rhinovirus and respiratory syncytial virus were more prevalent among the children. The prevalence rates of Staphylococcus aureus and human adenovirus peaked among the young adults. There were significant differences in the isolation rates of multiple pathogens from 2023 to 2025 (P<0.05). The isolation rates of Stenotrophomonas maltophilia, rhinovirus and Pneumocystis jirovecii showed significant monotonic upward trends (P<0.001), whereas the isolation rates of C. albicans and A. fumigatus exhibited significant monotonic downward trends with the years (P<0.001). CONCLUSIONS The viruses are dominant among the pathogens causing respiratory tract infections in this area, and the isolation rate of human herpesvirus 4(EBV) is high. The children are susceptible to H. influenzae and M. pneumoniae, while the elderly population is at higher risk of fungal and latent viral infections. The expanding prevalence of P. jirovecii calls for heightened clinical vigilance.

     

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