新型冠状病毒肺炎实验室检测策略

Strategies for COVID-19 test in laboratory

  • 摘要: 新型冠状病毒肺炎(Corona Virus Disease 2019,COVID-19)的早期快速实验室检测对病毒感染的治疗与预后监测极其关键,是提高救治效果的最重要手段。传统的基于聚合酶链式反应的核酸检测技术和基于免疫反应的蛋白检测技术是目前早期快速检测的主要手段,但是因方法学本身的限制,每种技术均存在着各自的优缺点。非特异性实验室指标也在COVID-19患者的临床诊疗中具有重要价值。本文主要从核酸、蛋白、常规实验室检测指标三个层面着手,对目前新型冠状病毒的检测方法和策略进行详细论述和对比分析,提出通过综合核酸、蛋白和血清学指标的多指标联合检测有望成为未来感染性疾病临床诊断的重要手段。

     

    Abstract: OBJECTIVE To explore the distribution and epidemiological characteristics of membrane porin ompK36 variants in Klebsiella pneumoniae causing clinical infection and observe the correlation between the membrane porin ompK36 variants and the virulence factor, drug resistance and clinical characteristics.METHODS Totally 71 strains of K. pneumoniae were clinically isolated from 71 patients who were hospitalized in The Affiliated Hospital of North China Polytechnic University from Aug 2018 to Dec 2018, 30 of which were carbapenem-resistant K. pneumoniae (CRKP), and 41 were carbapenem-sensitive K. pneumoniae (CSKP).The phenotypes of hypermucoviscosity (HM) were detected by means of stringing test, the membrane porin ompK36 variants, common capsular serotypes (K1, K2, K5, K20, K54, K57) and virulence genes(rmpA, wabG, uge, entB, aerobactin, iroN, kfuB) were detected by PCR, the genotypes of the strains were identified with the use of PFGE and MLST, and the drug resistance of the ompK36 types was observed. RESULTS Among the 71 strains of K. pneumoniae with the ompK36 variants, there were 12 (16.9%) strains of type A, 2 (2.8%) strains of type B, 28 (39.4%) strains of type C, 26 (36.6%) strains of type D and 3 (4.2%) untyped strains.There were 23 (76.7%) strains of CRKP carrying with ompK36 D and 27 (65.9%)strains of CSKP carrying with ompK36 C.Totally 29 (40.8%) strains were tested positive for HM phenotypes.The detection rate of capsular serotypes was 35.2% (25 strains), the strains of type K1, K2, K5 and K57 and 1 of 2 (50.0%) K54 strains belonged to type C.There was significant difference in the distribution of ompK36 variants between the rmpA and aerobactin genes(P<0.05).ST23 (35.7%) was the most common STs among the type C strains, followed by ST86 (17.9%), and all of the type K1 strains belonged to ST23; ST11 (41.9%) was the most common STs among the non-type C strains, followed by ST15 (9.3%).The drug resistance rate of the type D strains to cephalosporins, enzyme inhibitors, carbapenems and quinolones was the highest, while the drug resistance rate of the type C strains was the lowest among the four types. CONCLUSION The K. pneumoniae strains carrying with ompK36 C and D are dominant in the hospital; the HM phenotype, K1/K2 serotypes and virulence genes rmpA and aerobactin are the most common among the strains carrying with ompK36 C, the virulence score of the type C strains is the highest, and the drug resistance rate is the lowest.The drug resistance rate of the type D strains is the highest, ST11 is the predominant PFGE type, the detection of ompK36 variants may facilitate the clinical prediction of the K. pneumoniae virulence strains.

     

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